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From Genome Analysis Wiki
Jump to navigationJump to search→STEP 3 : Run GotCloud Variant Calling Pipeline
gotcloud/gotcloud snpcall --conf gotcloudExample/[[GBR60vc.conf]] --outdir gotcloudTutorialOut --numjobs 2 --region 20:42900000-43200000 --baseprefix gotcloudExample
gotcloud/gotcloud snpcall --conf gotcloudExample/[[GBR60vc.conf]] --outdir gotcloudTutorialOut --numjobs 2 --region 20:42900000-43200000 --baseprefix gotcloudExample
Upon successful completion of the variant calling pipeline (about 3-4 minutes), you will see the following message:
Upon successful completion of the variant calling pipeline (about 2-4 minutes), you will see the following message:
Commands finished in nnn secs with no errors reported
Commands finished in nnn secs with no errors reported
