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Tutorial: GotCloud (view source)

Revision as of 15:57, 2 August 2013

8 bytes added ,  15:57, 2 August 2013
→‎STEP 4 : Run GotCloud Genotype Refinement Pipeline
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The output from the thunderVcf (final step) of the genotype refinement pipeline is found in:  
 
The output from the thunderVcf (final step) of the genotype refinement pipeline is found in:  
−
  ls gotcloudTutorialOut/thunder/chr20/GBR/chr20.filtered.PASS.beagled.GBR.thunder.vcf.gz gotcloudTutorialOut/thunder/chr20/GBR/chr20.filtered.PASS.beagled.GBR.thunder.vcf.gz.tbi
+
  ls gotcloudTutorialOut/thunder/chr20/GBR/thunder/chr20.filtered.PASS.beagled.GBR.thunder.vcf.gz gotcloudTutorialOut/thunder/chr20/GBR/chr20.filtered.PASS.beagled.GBR.thunder.vcf.gz.tbi
    
== STEP 5 : Run GotCloud Association Analysis Pipeline (EPACTS) ==  
 
== STEP 5 : Run GotCloud Association Analysis Pipeline (EPACTS) ==  
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/7729"

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