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RAREMETAL Command Reference (view source)

Revision as of 14:12, 7 August 2013

342 bytes removed ,  14:12, 7 August 2013
→‎Describing Input Files
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                         --longOutput, --tabulateHits, --hitsCutoff [1.0e-06]
 
                         --longOutput, --tabulateHits, --hitsCutoff [1.0e-06]
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=== Describing Input Files ===
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=== Describing Studies ===
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   SEPARATOR        [WHITESPACE|COMMA|BOTH|TAB] (default = WHITESPACE)
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   --studyName [your.list.of.studies]
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  COLUMNCOUNTING  [STRICT|LENIENT]            (default = 'STRICT')
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  MARKERLABEL      [LABEL]                    (default = 'MARKER')
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  ALLELELABELS    [LABEL1 LABEL2]            (default = 'ALLELE1','ALLELE2')
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  EFFECTLABEL      [LABEL|log(LABEL)]          (default = 'EFFECT')
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  FLIP
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Additional details on the [[rareMETAL COLUMNCOUNTING|COLUMNCOUNTING]] and [[rareMETAL EFFECTLABEL|EFFECTLABEL]] options are available.
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Additional details on the [[http://genome.sph.umich.edu/wiki/Rare-Metal#List_of_Studies_2|--studyName]] option is available.
    
=== Filtering Input Files ===
 
=== Filtering Input Files ===
Shuang Feng
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/7775"

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