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RAREMETAL Command Reference

150 bytes added, 13:27, 7 August 2013
Methods to Group Rare Variants
=== Methods to Group Rare Variants ===
ADDFILTER --groupFile [LABEL CONDITION VALUEyour.groups.file] --annotatedVcf [your.annotated.vcf] --annotation (example = ADDFILTER N > 10)[nonsyn/stop/splice] (available conditions are <, >, <=, >=, =, !=, IN) REMOVEFILTERS --writeVcf [ON|OFF]
Additional details on these options are [[METAL ADDFILTERRare-Metal#Grouping_from_a_Group_File|groupFile]], [[Rare-Metal#Grouping_from_an_Annotated_VCF_File|annotatedVcf]] and [[Rare-Metal#Generate_a_VCF_File_to_Annotate_Outside_of_Rare_Metal|availablewriteVcf]]options are available.
=== Sample Size Weighted Meta-analysis ===
2,004
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