From Genome Analysis Wiki
Jump to navigationJump to search
1,170 bytes removed
, 13:42, 7 August 2013
Line 1: |
Line 1: |
− |
| |
| === Overview of Options === | | === Overview of Options === |
| Options: | | Options: |
Line 46: |
Line 45: |
| --tabulateHits [ON|OFF] | | --tabulateHits [ON|OFF] |
| --hitsCutoff [your.cutoff.for.hits] (default = 1e-06) | | --hitsCutoff [your.cutoff.for.hits] (default = 1e-06) |
− |
| |
− | === User Defined Variables ===
| |
− | CUSTOMVARIABLE [VARNAME]
| |
− | LABEL [VARNAME] AS [HEADER]
| |
− |
| |
− | Additional details on these options are [[METAL CUSTOMVARIABLE|available]].
| |
− |
| |
− | === Explicit Strand Information ===
| |
− | USESTRAND [ON|OFF] (default = OFF)
| |
− | STRANDLABEL [LABEL] (default = 'STRAND')
| |
− |
| |
− | === Genomic Control Correction of Input Statistics ===
| |
− | GENOMICCONTROL [ON|OFF|VALUE|LIST snps.txt](default = OFF)
| |
− |
| |
− | Additional details on this option are [[METAL GENOMICCONTROL|available]].
| |
− |
| |
− | === General Analysis Control ===
| |
− | PROCESSFILE [FILENAME]
| |
− | OUTFILE [PREFIX SUFFIX] (default = 'METAANALYSIS','.TBL')
| |
− | MAXWARNINGS [NUMBER] (default = 20)
| |
− | VERBOSE [ON|OFF] (default = 'OFF')
| |
− | LOGPVALUE [ON|OFF] (default = 'OFF')
| |
− | ANALYZE [HETEROGENEITY]
| |
− | CLEAR
| |
− |
| |
− | Additional details on the [[METAL LOGPVALUE|LogPValue]] and [[METAL VERBOSE|Verbose]] commands are available.
| |
− |
| |
− | === Script Control ===
| |
− |
| |
− | SOURCE [FILENAME]
| |
− |
| |
− | Additional details on this command are [[METAL SOURCE|available]].
| |