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, 13:42, 7 August 2013
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| | === Overview of Options === | | === Overview of Options === |
| | Options: | | Options: |
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| | --tabulateHits [ON|OFF] | | --tabulateHits [ON|OFF] |
| | --hitsCutoff [your.cutoff.for.hits] (default = 1e-06) | | --hitsCutoff [your.cutoff.for.hits] (default = 1e-06) |
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| − | === User Defined Variables ===
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| − | CUSTOMVARIABLE [VARNAME]
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| − | LABEL [VARNAME] AS [HEADER]
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| − | Additional details on these options are [[METAL CUSTOMVARIABLE|available]].
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| − | === Explicit Strand Information ===
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| − | USESTRAND [ON|OFF] (default = OFF)
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| − | STRANDLABEL [LABEL] (default = 'STRAND')
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| − | === Genomic Control Correction of Input Statistics ===
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| − | GENOMICCONTROL [ON|OFF|VALUE|LIST snps.txt](default = OFF)
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| − | Additional details on this option are [[METAL GENOMICCONTROL|available]].
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| − | === General Analysis Control ===
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| − | PROCESSFILE [FILENAME]
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| − | OUTFILE [PREFIX SUFFIX] (default = 'METAANALYSIS','.TBL')
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| − | MAXWARNINGS [NUMBER] (default = 20)
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| − | VERBOSE [ON|OFF] (default = 'OFF')
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| − | LOGPVALUE [ON|OFF] (default = 'OFF')
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| − | ANALYZE [HETEROGENEITY]
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| − | CLEAR
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| − | Additional details on the [[METAL LOGPVALUE|LogPValue]] and [[METAL VERBOSE|Verbose]] commands are available.
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| − | === Script Control ===
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| − | SOURCE [FILENAME]
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| − | Additional details on this command are [[METAL SOURCE|available]].
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