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, 20:33, 7 August 2013
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| | '''NOTE:''' if no grouping method is provided, then only single variant meta analysis will be performed. | | '''NOTE:''' if no grouping method is provided, then only single variant meta analysis will be performed. |
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| − | == Software Specifications ==
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| − | === Software User Interface ===
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| − | The following options are currently available in '''Rare Metal''':
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| − | Options:
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| − | List of Studies : --studyName []
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| − | Grouping Methods : --groupFile [], --annotatedVcf [], --annotation [],
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| − | --writeVcf
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| − | QC Options : --hwe [0.00], --callRate [0.00]
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| − | Association Methods : --burden, --MB, --SKAT, --VT
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| − | Other Options : --prefix [], --maf [0.05], --longOutput,
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| − | --tabulateHits, --hitsCutoff [1.0e-06]
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| | ==== List of Studies ==== | | ==== List of Studies ==== |
