Changes

From Genome Analysis Wiki
Jump to navigationJump to search
Line 255: Line 255:  
* According to the example above, PCSK9 had a p-value of 7.54587e-11 from the gene-based burden test, where three variants from this gene were included. Another hit from this meta analysis is APOE, where only one variant was included in the burden test.
 
* According to the example above, PCSK9 had a p-value of 7.54587e-11 from the gene-based burden test, where three variants from this gene were included. Another hit from this meta analysis is APOE, where only one variant was included in the burden test.
   −
==== Plots ====
+
==== QQ PLOTS and MANHATTAN PLOTS ====
 
'''rareMETAL''' generates QQ plots and manhattan plots from single variant and gene-level meta-analysis by default. Example QQ plots and manhattan plots are:
 
'''rareMETAL''' generates QQ plots and manhattan plots from single variant and gene-level meta-analysis by default. Example QQ plots and manhattan plots are:
 
{| border="0"
 
{| border="0"
2,004

edits

Navigation menu