From Genome Analysis Wiki
Jump to: navigation, search

RAREMETAL Documentation

32 bytes added, 21:27, 7 August 2013
'''rareMETAL''' generates QQ plots and manhattan plots from single variant meta-analysis by default. Three QQ plots are generated, one with all variants included, one of variants with maf<0.05 and one of variants with maf<0.01. All plots are saved in a pdf file named yourPrefix.meta.plots.pdf. Genomic controls are also reported in the title of plots. When --correctGC option is specified, GC corrected plots are also generated.
{| border="1" cellpadding="5" cellspacing="0" align="center"
| align="center" width="100" | [[File:HDL.qq.plot.png]]

Navigation menu