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, 22:28, 7 August 2013
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| * According to the example above, PCSK9 had a p-value of 7.54587e-11 from the gene-based burden test, where three variants from this gene were included. Another hit from this meta analysis is APOE, where only one variant was included in the burden test. | | * According to the example above, PCSK9 had a p-value of 7.54587e-11 from the gene-based burden test, where three variants from this gene were included. Another hit from this meta analysis is APOE, where only one variant was included in the burden test. |
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− | ==== QQ PLOTS and MANHATTAN PLOTS ==== | + | ==== PLOTS ==== |
| '''rareMETAL''' generates QQ plots and manhattan plots from single variant and gene-level meta-analysis by default. Example QQ plots and manhattan plots are: | | '''rareMETAL''' generates QQ plots and manhattan plots from single variant and gene-level meta-analysis by default. Example QQ plots and manhattan plots are: |
| {| border="1" cellpadding="5" cellspacing="0" align="center" | | {| border="1" cellpadding="5" cellspacing="0" align="center" |
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| | align="center" width="200" | [[File:burden.manhattan.png]] | | | align="center" width="200" | [[File:burden.manhattan.png]] |
| |} | | |} |
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| ==== Log File ==== | | ==== Log File ==== |