From Genome Analysis Wiki
Jump to: navigation, search

RAREMETAL Documentation

54 bytes added, 22:31, 7 August 2013
From an Annotated VCF File
====== From an Annotated VCF File ======
If --groupFile option is '''NOT''' specified, '''rareMETAL''' will look for an annotated vcf file as blue print for variants to group. Users are also allowed to generate a vcf file based on the superset of variants from pooled samples, and annotate outside rareMETAL. Then, annotated vcf file can be used as input for rareMETAL for gene-level meta-analysis, or group files can be generated based on the annotated vcf file. Detailed description of these options are [[Rare-Metal#Group_Rare_Variants_from_Annotated_VCF|available]]. There are also examples of this usage at the bottom of this page.
==== QC Options ====

Navigation menu