2,004
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Summary Statistics
=====Summary Statistics=====
=====Summary Statistics=====
Files containing summary statistics and LD matrices generated by '''rareMetalWorker''' should be compressed and tabix indexed using the following commands:
Files containing summary statistics and LD matrices generated by '''rareMetalWorker''' should be compressed and [[http://samtools.sourceforge.net/tabix.shtml|tabix]] indexed using the following commands:
bgzip study1.singlevar.score.txt
bgzip study1.singlevar.score.txt
tabix -s 1 -b 2 -e 2 -c "#" study1.singlevar.score.txt.gz
tabix -s 1 -b 2 -e 2 -c "#" study1.singlevar.score.txt.gz
bgzip study1.singlevar.cov.txt
bgzip study1.singlevar.cov.txt
tabix -s 1 -b 2 -e 2 -c "#" study1.singlevar.cov.txt.gz
tabix -s 1 -b 2 -e 2 -c "#" study1.singlevar.cov.txt.gz
