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RAREMETAL Documentation

1 byte removed, 13:13, 8 August 2013
Example Command lines
./raremetal --studyName your.studyName.file --annotatedVcf your.annotated.vcf --annotation nonsyn/stop/splicing --SKAT --longOutput --tabulateHits --hitsCutoff 1.0e-07 --hwe 1e-06 --callRate 0.98 --prefix yourPrefix
* If you want to write a VCF file of pooled variants from all studies, annotate them using your favorite annotation program, and then come back to '''Rare MetalrareMETAL''' with the annotate VCF file to do burden tests:
First, use the following command to write the VCF file:
./raremetal --studyName your.studyName.file --writeVcf --prefix yourPrefix

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