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RAREMETAL Documentation

No change in size, 11:40, 15 August 2013
Example Command lines
./raremetal --studyName your.studyName.file --annotatedVcf your.annotated.vcf --annotation nonsyn/stop/splicing --SKAT --longOutput --tabulateHits --hitsCutoff 1.0e-07 --hwe 1e-06 --callRate 0.98 --prefix yourPrefix
* If you want to write a VCF file of pooled variants from all studies, annotate them using your favorite annotation program, and then come back to '''rareMETALRAREMETAL''' with the annotate VCF file to do burden tests:
First, use the following command to write the VCF file:
./raremetal --studyName your.studyName.file --writeVcf --prefix yourPrefix

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