Changes

   $yourpathforRAREMETALWORKER/bin/raremetalworker  --ped example1.ped --dat example1.dat --vcf example1.vcf.gz

   $yourpathforRAREMETALWORKER/bin/raremetalworker  --ped example1.ped --dat example1.dat --vcf example1.vcf.gz

                                 --traitName QT1 --inverseNormal --makeResiduals --kinSave --kinGeno --prefix ../yourprefix.example1

                                 --traitName QT1 --inverseNormal --makeResiduals --kinSave --kinGeno --prefix ../yourprefix.example1 --labelHits

* The command above allows you to estimate relatedness according to common variants genotypes with good variant calling quality, adjust for covariates, quantile normalize the residuals before further association analysis of trait QT1. The following output are generated:

* The command above allows you to estimate relatedness according to common variants genotypes with good variant calling quality, adjust for covariates, quantile normalize the residuals before further association analysis of trait QT1. The following output are generated:

   $yourpathforRAREMETALWORKER/bin/raremetalworker  --ped example2.ped --dat example2.dat --vcf example2.vcf.gz

   $yourpathforRAREMETALWORKER/bin/raremetalworker  --ped example2.ped --dat example2.dat --vcf example2.vcf.gz

                                 --traitName QT1 --inverseNormal --makeResiduals --kinSave --kinGeno --prefix yourprefix.example2

                                 --traitName QT1 --inverseNormal --makeResiduals --kinSave --kinGeno --prefix yourprefix.example2 --labelHits

==STEP 3: Run RAREMETAL for Meta-Analysis==

==STEP 3: Run RAREMETAL for Meta-Analysis==