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, 15:24, 27 August 2013
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| BEDFILE_IS_SORTED: True or false, depending on whether the BED files listed in the index file are sorted. | | BEDFILE_IS_SORTED: True or false, depending on whether the BED files listed in the index file are sorted. |
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| + | == Results Output == |
| + | The file StatisticSummaryFile.txt in the output directory contains enrichment results with the following information: |
| + | Bed_File: The BED file containing the positions for a particular functional domain |
| + | InBed_Index_SNP: Number of index SNPs or LD proxies (r2>0.7) that overlaps BED file |
| + | Pvalue: P-value calculated assuming a sum of binomial distributions to represent the number of index SNPs (or LD proxies) that overlap a BED file compared to the expectation observed in the matched control sets |
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| == Acknowledgements == | | == Acknowledgements == |
| FallInBed is the result of collaborative efforts by Cristen Willer, Jin Chen, Wei Zhou, Ellen Schmidt, He Zhang, and Goncalo Abecasis. Please email Cristen Willer [cristen@umich.edu] for any questions. | | FallInBed is the result of collaborative efforts by Cristen Willer, Jin Chen, Wei Zhou, Ellen Schmidt, He Zhang, and Goncalo Abecasis. Please email Cristen Willer [cristen@umich.edu] for any questions. |