18
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search
mLine 77:
Line 77: − +
→Configuration File
In the config file, there are several parameters to adjust:
In the config file, there are several parameters to adjust:
INDEX_SNP_FILE: This file lists the trait-associated input SNPs. In this file, there is a single column without a header. Index SNPs can be in rsid or hg19 chr:pos format.
INDEX_SNP_FILE: This file contains a single column of trait-associated input SNPs, without a header. Variants can be listed in rsid or hg19 chr:pos format.
BED_FILE_INDEX: This file lists the datasets (e.g. BED files) to be used for enrichment analysis. Use complete paths to file locations and make sure positions are in hg19 format.
BED_FILE_INDEX: This file lists the datasets (e.g. BED files) to be used for enrichment analysis. Use complete paths to file locations and make sure positions are in hg19 format.
