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124 bytes added ,  15:32, 23 September 2013
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*Two options of mutation model:
 
*Two options of mutation model:
 
**Transitions (C <-> T or A <-> G) accounts for most variants, while transversions account for minority of variants
 
**Transitions (C <-> T or A <-> G) accounts for most variants, while transversions account for minority of variants
**Uniform prior for transition to transversion ratio (1:1)
+
***transition has 2/3 probability
 +
***each transversion has 1/6 probability
 +
**Uniform (uninformative) prior for transition to transversion ratio
 +
***each mutation has a 1/3 probability
    
== Download ==
 
== Download ==
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