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, 16:14, 25 September 2013
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| --maxDepth ''threshold'' Positions where the read depth exceeds this threshold will be excluded. | | --maxDepth ''threshold'' Positions where the read depth exceeds this threshold will be excluded. |
| --reference Positions called as homozygous reference will be included in the output. | | --reference Positions called as homozygous reference will be included in the output. |
− | --uniformTsTv Use a uniform prior for transition-to-transversion ratio.
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| To learn about default values for these options, simply run the program with no arguments. | | To learn about default values for these options, simply run the program with no arguments. |