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** Zlib.pm - required for perl scripts to read compressed files.
** Zlib.pm - required for perl scripts to read compressed files.
* make - GNU make is used to run the pipelines
* make - GNU make is used to run the pipelines
* java - required to run the beagle step of the ld-aware genotype refinement
* java - required to run the beagle step of the ld-aware genotype refinement
You can check if your system has the proper software installed by invoking the command
[gotcloud_path]/scripts/check_requirements.sh
== Install GotCloud Software ==
== Install GotCloud Software ==
