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RAREMETAL Documentation

1 byte added, 15:07, 4 November 2013
Basic Usage Instructions
== Basic Usage Instructions ==
'''raeMETALRAREMETAL''' is a command line tool. It is typically run from a Linux or Unix prompt by invoking the command <code>raremetal</code>. In the following are descriptions of basic usage for meta analysis. A detailed [[Tutorial:_RareMETAL|'''TUTORIAL''']] with toy data are also available.
==== Prepare Input Files====
'''rareMETALRAREMETAL''' requires the following basic input files: summary statistics and covariance matrices of score statistics generated by '''rareMetalWorker''' or [http://genome.sph.umich.edu/wiki/Rvtests '''rvtests'''], a file with list of studies to be included and a group file if gene-level meta-analysis is expected.
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