Changes

From Genome Analysis Wiki
Jump to: navigation, search

Rvtests

No change in size, 16:07, 4 December 2013
Genotyep filters
''NOTE'': <code>--annoType Nonsynonymous</code> will only analyze nonsynonymous variants where they have <code>ANNO=Nonsynonymous</code> in the INFO field. VCF with annotatino information are called annotated VCF here. And to annotate a VCF file, you can use [https://github.com/zhanxw/anno ANNO], a fast and accurate annotation software.
== Genotyep Genotype filters ==
Genotype with low depth or low quality can be filtered out by these options:

Navigation menu