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Genotyep filters
''NOTE'': <code>--annoType Nonsynonymous</code> will only analyze nonsynonymous variants where they have <code>ANNO=Nonsynonymous</code> in the INFO field. VCF with annotatino information are called annotated VCF here. And to annotate a VCF file, you can use [ ANNO], a fast and accurate annotation software.
== Genotyep Genotype filters ==
Genotype with low depth or low quality can be filtered out by these options:

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