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LibStatGen: BAM

34 bytes added, 08:56, 6 April 2010
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==== Usage Example ====
This example reads in the inputFilename bam file and writes it back out section by section to the specified outputFilename, starting with section -1. It also prints a count of the number of records in each section.
<presource lang="cpp">
int ReadIndexedBam(const char* inputFilename,
const char* outputFilename,
return(0);
}
</presource>
Example of using getNextSamTag:
<presource lang="cpp">
// record is a previously setup SamRecord.
String recordString = "";
recordString += "\n";
</presource>
== Suggested Improvements/Features ==
* Add optional user flag for checking if a file is sorted when it is read. It would report an error if it is unsorted.

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