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To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
To install an official release, unpack the downloaded file (tar xvf), cd into the libStatGen directory and type <code>make all</code>.
[[Media:LibStatGen.1.0.9.tgz|LibStatGen.1.0.9.tgz]] - Released 7/7/2013
[[Media:LibStatGen.1.0.10.tar.gz|LibStatGen.1.0.10.tar.gz]] - Released 1/2/2014
'''LibStatGen.1.0.9 Release Notes'''
'''LibStatGen.1.0.10 Release Notes'''
* Contains classes for general processiong (string, reference file, parameters), bam, glf, fastq, and vcf
* Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
** Updates:
** Updates:
*** Update Makefile processing to check for a Makefile in the test directory before recursively calling make in there
*** Add PhoneHome/version checking logic
**General Updates:
**General Updates:
*** Add boundary check to StringBasics memory
*** fix use of strncpy to fix compile problem for some users
*** Added support for new CIGAR characters (X & =)
*** Fix compile problem on gcc 4.8.1 by adding -Wno-strict-overflow in general/Makefile after -Werror
*** Update bug in PedigreeLoader to specify WHITESPACE
*** Reduce the default IFILE read buffer size from 1MB to 64KB.
*** add accessors for getting tabix information
*** Fix ifclose to take a IFILE reference so it can make the pointer 0 after closing
*** StringBasics::AsInteger now returns false if the string is empty.
*** GzipFileType - update to accept -.gz as stdin/stdout
*** Remove unnecssary line from Parameters Status call
*** Fix memory leak on Tabix destructor
** Vcf Updates:
** Vcf Updates:
*** add ability to drop trailing missing Genotype fields
*** VCF - add class/methods to discard records based on ID
** Bam Updates:
** Bam Updates:
*** SamHeaderRecord: add accessor to get the value for the key
*** SamFlag - add isSecondary check
*** update some classes to have virtual destructors
*** Fix SamFile so it only allows '-', '-.sam', '-.bam', or '-.ubam' to indicate reading from stdin rather than anything that starts with '-' in order to protect it from misinterpreting another parameter as the stdin filename
*** SamRecord: Add warnings about Duplicate Tags being overwritten
*** SamFile - improve sort order validation error messages and compare using both String::Compare and strcmp to handle various sort mechanisms since neither matches samtools exactly (if either is successful, the sort order is OK)
** Glf Updates:
*** GlfFile cleanup bugs/handle missind endMarkers & update "get" methods to be const
''' Older Releases'''
*[[Media:LibStatGen.1.0.9.tgz|LibStatGen.1.0.9.tgz]] - Released 7/7/2013
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** Updates:
**** Update Makefile processing to check for a Makefile in the test directory before recursively calling make in there
**** Replace CFLAGS wtih COMPFLAGS
**** Update the Windows WIN32 if statements
***General Updates:
**** Add boundary check to StringBasics memory
**** Added support for new CIGAR characters (X & =)
**** Update bug in PedigreeLoader to specify WHITESPACE
**** add accessors for getting tabix information
*** Vcf Updates:
**** add ability to drop trailing missing Genotype fields
**** check that the tabix index is for VCF file type
**** Fix broken dependency
*** Bam Updates:
**** SamHeaderRecord: add accessor to get the value for the key
**** update some classes to have virtual destructors
*[[Media:LibStatGen.1.0.8.tgz|LibStatGen.1.0.8.tgz]] - Released 1/29/2013
*[[Media:LibStatGen.1.0.8.tgz|LibStatGen.1.0.8.tgz]] - Released 1/29/2013
** Contains classes for general processiong (string, reference file, parameters), bam, glf, fastq, and vcf
** Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
*** Updates:
*** Updates:
**** Added VCF file handling (merged the vcf branch to master)
**** Added VCF file handling (merged the vcf branch to master)
*[[Media:LibStatGen.1.0.7.tgz|LibStatGen.1.0.7.tgz]] - Released 1/29/2013
*[[Media:LibStatGen.1.0.7.tgz|LibStatGen.1.0.7.tgz]] - Released 1/29/2013
** Contains classes for general processiong (string, reference file, parameters), bam, glf, and fastq
** Contains classes for general processing (string, reference file, parameters), bam, glf, and fastq
*** Updates:
*** Updates:
**** Add operator== to StringIntHash
**** Add operator== to StringIntHash
