3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Optional Parameters For Other Operations
Left shift indels as far as they can go in the read.
Left shift indels as far as they can go in the read.
=== Skip an Records with any of the Specified Flags (<code>--excludeFlags</code>) ===
Use <code>--excludeFlags</code> followed by the flags (as one integer) to skip any records that has any of the specified flags set.
=== Only Process Records with the all of the Specified Flags (<code>--requiredFlags</code>) ===
Use <code>--requiredFlags</code> followed by the flags (as one integer) to only process records with all of the specified flags set.
{{paramsParameter|hdr====}}
{{paramsParameter|hdr====}}
