3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Class Methods
| <code>bool SamFile::ReadRecord(SamFileHeader& header, SamRecord& record)</code>
| <code>bool SamFile::ReadRecord(SamFileHeader& header, SamRecord& record)</code>
| Reads the next record from the file and stores it in the passed in record.
| Reads the next record from the file and stores it in the passed in record.
Returns true if successfully read, false if not.
Validates that the record is sorted according to the value set by <code>setSortedValidation</code>. No sorting validation is done if specified to be unsorted, or <code>setSortedValidation</code> was never called.
Returns false if the record was not successfully read or not properly sorted. Returns true if successfully read and properly sorted.
|-
|-
| <code>bool SamFile::WriteRecord(SamFileHeader& header, SamRecord& record)</code>
| <code>bool SamFile::WriteRecord(SamFileHeader& header, SamRecord& record)</code>
| Writes the specified record into the file.
| Writes the specified record into the file.
Returns true if successfully written, false if not.
Validates that the record is sorted according to the value set by <code>setSortedValidation</code>. No sorting validation is done if specified to be unsorted, or <code>setSortedValidation</code> was never called. Returns false and does not write the record if the record was not properly sorted.
Returns false if the record was not properly sorted or not successfully written. Returns true if properly sorted and successfully written.
|-
|-
| <code>void setSortedValidation(SortedType sortType)<\code>
| <code>void setSortedValidation(SortedType sortType)<\code>
