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From Genome Analysis Wiki
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* make - GNU make is used to run the pipelines
* make - GNU make is used to run the pipelines
* java - required to run the beagle step of the ld-aware genotype refinement
* java - required to run the beagle step of the ld-aware genotype refinement
* curses/ncurses (required for samtools)
** On Ubuntu: <code>sudo apt-get install libncurses5 libncurses5-dev</code>
* cmake (required for premo)
** On Ubuntu: <code>sudo apt-get install cmake</code>
You can check if your system has the proper software installed by invoking the command
You can check if your system has the proper software installed by invoking the command
