3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
! Method Name !! Description
! Method Name !! Description
|-
|-
| <code>bool addHeaderLine(const char* type, const char* tag, int value)</code>
| <code>bool SamFileHeader::addHeaderLine(const char* type, const char* tag, int value)</code>
| Adds the type, tag, and integer value to the header.
| Adds the type, tag, and integer value to the header.
Returns true if successfully added, false if not.
Returns true if successfully added, false if not.
NOTE: currently, this method will only do one tag per type on a line. If a type has multiple tags, then the whole line needs to be added at once.
NOTE: currently, this method will only do one tag per type on a line. If a type has multiple tags, then the whole line needs to be added at once.
|-
|-
| <code>bool addHeaderLine(const char* type, const char* tag, const char* value)</code>
| <code>bool SamFileHeader::addHeaderLine(const char* type, const char* tag, const char* value)</code>
| Adds the type, tag, and const char* value to the header.
| Adds the type, tag, and const char* value to the header.
Returns true if successfully added, false if not.
Returns true if successfully added, false if not.
NOTE: currently, this method will only do one tag per type on a line. If a type has multiple tags, then the whole line needs to be added at once.
NOTE: currently, this method will only do one tag per type on a line. If a type has multiple tags, then the whole line needs to be added at once.
|-
|-
| <code>bool addHeaderLine(const char* headerLine)</code>
| <code>bool SamFileHeader::addHeaderLine(const char* headerLine)</code>
| Adds the already setup/formatted headerLine to the header. It is assumed that the line does not contain a “\n”.
| Adds the already setup/formatted headerLine to the header. It is assumed that the line does not contain a “\n”.
Returns true if successfully added, false if not.
Returns true if successfully added, false if not.
! Method Name !! Description
! Method Name !! Description
|-
|-
| <code>const char* getTagSO()</code>
| <code>const char* SamFileHeader::getTagSO()</code>
| Return the value of the SO tag. If the field does not exist, "unsorted" is returned.
| Return the value of the SO tag. If the field does not exist, "unsorted" is returned.
|}
|}
'''NOTE: More Get Accessors will be coming. Let me know if you need a specific one, and I can add that first'''
'''NOTE: More Get Accessors will be coming. Let me know if you need a specific one, and I can add that first'''
