3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
<path to base pipeline directory>/libbam.a <path to base pipeline directory>/libcsg/libcsg.a <path to base pipeline directory>/thirdParty/samtools/libbam.a
<path to base pipeline directory>/libbam.a <path to base pipeline directory>/libcsg/libcsg.a <path to base pipeline directory>/thirdParty/samtools/libbam.a
=== Classes in the BAM/SAM Library ===
{| style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1"
|-style="background: #f2f2f2; text-align: center;"
! Class Name !! Description
|-
| <code>[[C++ Class: SamFile|SamFile]]</code>
| Class used for reading/writing SAM/BAM files and their headers and records.
|-
| <code>[[C++ Class: SamFileHeader|SamFileHeader]]</code>
| Class used for storing the header. Allows access for getting and setting header values when both reading & writing SAM/BAM files.
|-
| <code>[[C++ Class: SamRecord|SamRecord]]</code>
| Class used for storing a SAM/BAM Record. Allows access for getting and setting record values when both reading & writing SAM/BAM files.
|-
|}
== Suggested Improvements/Features ==
== Suggested Improvements/Features ==
