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Tutorial: RAREMETAL (view source)

Revision as of 10:58, 29 January 2014

195 bytes removed ,  10:58, 29 January 2014
→‎STEP 3: Run RAREMETAL for Meta-Analysis
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             --hwe 1.0e-05 --callRate 0.95 --longOutput --tabulateHits --hitsCutoff 1e-05 --prefix COMBINED.QT1 --labelHits
 
             --hwe 1.0e-05 --callRate 0.95 --longOutput --tabulateHits --hitsCutoff 1e-05 --prefix COMBINED.QT1 --labelHits
   −
'''Challenge:''' To ensure the command runs properly, you will have to find "group.file", which tells RAREMETAL which variants to group in gene level tests and copy it to the current directory.
      
* The following output will be generated:
 
* The following output will be generated:
Shuang Feng
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/9416"

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