1,102
edits
Changes
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Indel representation is not unique, you should normalize them and remove duplicates.
Indel representation is not unique, you should normalize them and remove duplicates.
{| class="wikitable"
|-
! scope="col"| Dataset
! scope="col"| Freebayes
! scope="col"| Haplotyecaller
! scope="col"| PINDEL
! scope="col"| Platypus
! scope="col"| RTG
! scope="col"| Samtools
! scope="col"| SGA
|-
| Biallelic
|-
| Left trim
| 27069
| 1
| 0
| 0
| 0
| 0
| 15047
|-
| Left aligned
| 3
| 1
| 1
| 0
| 12262
| 2
| 1892
|-
| Multi-allelic
|-
| Left trim
| 40782
| 0
| 0
| 0
| 374
|
|
|-
| Left aligned
| 1892
| 0
| 0
| 0
| 1329
| 1
| 0
|-
| Right trimmed
| 0
| 0
| 0
| 25393
| 0
| 11
| 0
|-
| Duplicate variants
| 0
| 1
| 155
| 3143
| 286
| 8
| 7541
|}
==Annotation of Indels==
==Annotation of Indels==
