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Analyses of Indels (view source)

Revision as of 16:10, 20 February 2014

110 bytes added ,  16:10, 20 February 2014
→‎Peek
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   vt peek mills.sites.bcf -f "PASS&&N_ALLELE==2&&LEN==1&&INFO.AC/INFO.AN<0.03"
 
   vt peek mills.sites.bcf -f "PASS&&N_ALLELE==2&&LEN==1&&INFO.AC/INFO.AN<0.03"
 +
 +
which you will observe discrepancies due to rounding off in AF.  So you should probably use INFO.AC/INFO.AN.
    
==Normalization==
 
==Normalization==
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