1,102
edits
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You can obtain it by using the profile_indels analysis.
You can obtain it by using the profile_indels analysis.
vt profile_indels -g ~/ref/vt/grch37/indel.reference.txt -r ~/ref/vt/grch37/hs37d5.fa mills.normalized.sites.bcf
vt profile_indels -g indel.reference.txt -r ~/ref/vt/grch37/hs37d5.fa mills.normalized.sites.bcf
The indel.reference.txt file contains the required reference to perform the overlap analysis.
The indel.reference.txt file contains the required reference to perform the overlap analysis.
data set
No Indels : 8904 [0.93]
FS/NFS : 0.66 (67/35)<br>
dbsnp
A-B 2975 [1.06]
A&B 5929 [0.86]
B-A 2059845 [1.51]
Precision 66.6%
Sensitivity 0.3% <br>
mills
A-B 5705 [0.81]
A&B 3199 [1.18]
B-A 203819 [0.98]
Precision 35.9%
Sensitivity 1.5% <br>
mills.chip
A-B 0 [-nan]
A&B 8904 [0.93]
B-A 0 [-nan]
Precision 100.0%
Sensitivity 100.0% <br>
affy.exome.chip
A-B 8821 [0.93]
A&B 83 [0.69]
B-A 34011 [0.47]
Precision 0.9%
Sensitivity 0.2%
==STR ==
==STR ==
