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BamUtil

828 bytes added, 16:18, 28 February 2014
Release of just BamUtil (does not include libStatGen)
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all.
* [[Media:BamUtil.1.0.1011.tar.gztgz|BamUtil.1.0.1011.tar.gz‎tgz‎]] - Released 12/228/2014
'''BamUtil.1.0.10 Release Notes'''
* [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz‎]] - Released 2/28/2014
** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]]
** Update [[BamUtil: splitBam|splitBam]] & [[BamUtil: polishBam|polishBam]]
*** Update to work properly if log & output file are not specified (no longer creates '.log')
** Update Main dummy/example tool to indicate the correct tool
** Update to [[BamUtil: bam2FastQ|bam2FastQ]], [[BamUtil: clipOverlap|clipOverlap]], [[BamUtil: filter|filter]], [[BamUtil: mergeBam|mergeBam]], [[BamUtil: splitBam|splitBam]], [[BamUtil: squeeze|squeeze]], [[BamUtil: stats|stats]]
*** Cleanup usage/parameter descriptions
** Update [[BamUtil: revert|revert]]
*** Update compatibility with libStatGen due to 'B' & 'f' tag handling updates
** Add tests for 'B' & 'f' tags
 
 
'''Older Releases'''
 
* [[Media:BamUtil.1.0.10.tar.gz|BamUtil.1.0.10.tar.gz‎]] - Released 1/2/2014
** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.10]]
*** add more informative header merge error messages
 
'''Older Releases'''
* [[Media:BamUtil.1.0.9.tgz|BamUtil.1.0.9.tgz‎]] - Released 7/7/2013
** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.9]] (version 1.0.7 should also work)

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