1,102
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Indel representation is not unique, you should normalize them and remove duplicates.
Indel representation is not unique, you should normalize them and remove duplicates.
Variant normalization is implemented in [[vt#Normalization|vt]] and this page explains the algorithm
and also provides a simple proof of correctness - [[Variant_Normalization|Variant Normalization]]
The following table shows the number of variants that had to be normalized and the corresponding
The following table shows the number of variants that had to be normalized and the corresponding
Out of 9996 passed variants, it was found that after normalization, only 8904 distinct Indels remain
Out of 9996 passed variants, it was found that after normalization, only 8904 distinct Indels remain
- about a loss of 11% of variant thought distinct.
- about a loss of 11% of variant thought distinct.
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