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168 bytes removed
, 21:32, 23 January 2012
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| #will generate frequency tags. | | #will generate frequency tags. |
| arf -a hwe 1000g.vcf | | arf -a hwe 1000g.vcf |
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− | #conducts HWE LRT test from genotype likelihoods (multiallelic)
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− | #will attempt to use existing allele frequency estimates in the info
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− | arf -a hwe 1000g.vcf -e
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| #estimates Inbreeding Coefficient F from genotype likelihood | | #estimates Inbreeding Coefficient F from genotype likelihood |