Changes

   arf -a complexity 1000g.vcf -g genome.fa -l 30

   arf -a complexity 1000g.vcf -g genome.fa -l 30

== In development ==

== In development/Pending update ==

   #annotates variants

   #annotates variants

   arf -a vartype 1000g.vcf -l 30

   arf -a vartype 1000g.vcf -l 30

   #compute [Genotype Likelihood Based Allele Balance Allele balance]

   #compute [[Genotype Likelihood Based Allele Balance]]  

   ##INFO=<ID=AB,Number=1,Type=float,Description="Allele Balance computed from genotype likelihoods">

   ##INFO=<ID=AB,Number=1,Type=float,Description="Allele Balance computed from genotype likelihoods">

   #requires PL/GL and DP in the genotype fields

   #requires PL/GL and DP in the genotype fields

   arf -a allelebalance 1000g.vcf

   arf -a ab 1000g.vcf

 

== Command Line Options ==

== Command Line Options ==