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213 bytes added
, 18:38, 2 February 2012
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| arf -a complexity 1000g.vcf -g genome.fa -l 30 | | arf -a complexity 1000g.vcf -g genome.fa -l 30 |
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− | == In development == | + | == In development/Pending update == |
| | | |
| #annotates variants | | #annotates variants |
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| ##INFO=<ID=AB,Number=1,Type=float,Description="Allele Balance computed from genotype likelihoods"> | | ##INFO=<ID=AB,Number=1,Type=float,Description="Allele Balance computed from genotype likelihoods"> |
| #requires PL/GL and DP in the genotype fields | | #requires PL/GL and DP in the genotype fields |
− | arf -a allelebalance 1000g.vcf | + | arf -a ab 1000g.vcf |
| + | |
| + | #-e option |
| + | #when used in conjunction with an analysis that requires allele or genotype frequency estimates, |
| + | #will attempt to find estimates in the AF, GF and HWEAF fields |
| + | arf -a ab 1000g.vcf -e |
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| == Command Line Options == | | == Command Line Options == |