From Genome Analysis Wiki
Jump to navigationJump to search
189 bytes removed
, 15:47, 27 January 2012
Line 67: |
Line 67: |
| #-l option defines the length in which to differentiate INDELs and SVs | | #-l option defines the length in which to differentiate INDELs and SVs |
| arf -a vartype 1000g.vcf -l 30 | | arf -a vartype 1000g.vcf -l 30 |
− |
| |
− | #extracts GT fields from 1000g.vcf for the variants found in paltum.sit.vcf
| |
− | #-d specifies a data processing action
| |
− | arf -d extract 1000g.chr1.vcf 1000g.ch2.vcf -f paltum.site.vcf
| |
| | | |
| == Command Line Options == | | == Command Line Options == |