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#EXON - flag
#EXON - flag
arf -a exon 1000g.vcf
arf -a exon 1000g.vcf
#computes extracts flanking sequence around a variant
#adds the info tag
#FLANKS - 5' sequence, reference allele, 3' sequence up to length n defined by option -l, default is 25
arf -a flanks 1000g.vcf -g genome.fa -l 30
#computes a complexity measure for flanking sequences around a variant
#computes a complexity measure for flanking sequences around a variant
#adds the info tag
#adds the info tag
#C - complexity measure
#FLANKS - 5' sequence, reference allele, 3' sequence up to length n defined by option -l, default is 25
#CPXY - complexity measure
arf -a c 1000g.vcf -g genome.fa
arf -a c 1000g.vcf -g genome.fa
