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Arf (view source)

Revision as of 21:32, 23 January 2012

168 bytes removed ,  21:32, 23 January 2012
→‎Basic Usage Example
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   #will generate frequency tags.
 
   #will generate frequency tags.
 
   arf -a hwe 1000g.vcf
 
   arf -a hwe 1000g.vcf
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  −
  #conducts HWE LRT test from genotype likelihoods (multiallelic)
  −
  #will attempt to use existing allele frequency estimates in the info
  −
  arf -a hwe 1000g.vcf -e
      
   #estimates Inbreeding Coefficient F from genotype likelihood
 
   #estimates Inbreeding Coefficient F from genotype likelihood
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