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#adds the info tags
#adds the info tags
#HWP - HWE P-value
#HWP - HWE P-value
#HWCHISQ - HWE Chisquare value
#HWCHISQ - HWE Chi-square value
#HWDOF - Degrees of Freedom for test
#HWDOF - Degrees of freedom for test
#will generate frequency tags.
#will generate frequency tags.
arf -a hwe 1000g.vcf
arf -a hwe 1000g.vcf
#estimates Inbreeding Coefficient F from genotype likelihood
#estimates Inbreeding coefficient F from genotype likelihood
#adds the info tag
#adds the info tag
#F - Inbreeding Coefficient
#F - Inbreeding coefficient
arf -a f 1000g.vcf
arf -a f 1000g.vcf
