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for is genome-bs.umfa, if the memory mapped file is not
for is genome-bs.umfa, if the memory mapped file is not
found, it will be automatically generated from the fasta file)
found, it will be automatically generated from the fasta file)
l length of flanking sequence
l length of flanking sequence (default is 25)
a analysis/annotation
a analysis/annotation
o output file name
o output file name (default is arf.vcf)
f annotation file name (can be gzipped)
f annotation file name (can be gzipped)
