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, 23:36, 25 January 2012
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| #input VCF file can be gzipped | | #input VCF file can be gzipped |
| arf -a complexity 1000g.vcf.gz -g genome.fa -l 30 -o paltum.vcf | | arf -a complexity 1000g.vcf.gz -g genome.fa -l 30 -o paltum.vcf |
| + | |
| + | #multiple analyses/annotations at once is possible |
| + | arf -a complexity,f,hwe,exons 1000g.vcf.gz -g genome.fa -l 30 -o paltum.vcf -f refGene.txt.gz |
| | | |
| #estimates allele and genotype frequencies from genotype likelihoods. | | #estimates allele and genotype frequencies from genotype likelihoods. |