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arf -a complexity 1000g.vcf.gz -g genome.fa -l 30 -o paltum.vcf
arf -a complexity 1000g.vcf.gz -g genome.fa -l 30 -o paltum.vcf
#multiple analyses/annotations at once is possible
arf -a complexity,f,hwe,exons 1000g.vcf.gz -g genome.fa -l 30 -o paltum.vcf -f refGene.txt.gz
arf -a complexity,f,hwe,exons 1000g.vcf.gz -g genome.fa -l 30 -o paltum.vcf -f refGene.txt.gz
