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− | [[Media:BamUtilLibStatGen.1.0.5.tgz|BamUtilLibStatGen.1.0.5.tgz]] - Released 10/24/2012 | + | [[Media:BamUtilLibStatGen.1.0.6.tgz|BamUtilLibStatGen.1.0.6.tgz]] - Released 11/14/2012 |
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− | '''BamUtilLibStatGen.1.0.5 Release Notes''' | + | '''BamUtilLibStatGen.1.0.6 Release Notes''' |
− | * Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.5]] | + | * Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.6]] |
− | * Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.5]] | + | * Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.6]] |
− | * Updates to: [[BamUtil: dedup|dedup]], [[BamUtil: polishBam|polishBam]], [[BamUtil: recab|recab]] | + | * Update to [[BamUtil: trimBam|trimBam]] |
− | * Update to add compile option to compile without C++0x/C++11 | + | ** Update to allow trimming a different number of bases from each end of the read |
− | * See [[#Release of just BamUtil (does not include libStatGen)|below]] for additional details on updates
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| '''Older Releases''' | | '''Older Releases''' |
| + | *[[Media:BamUtilLibStatGen.1.0.5.tgz|BamUtilLibStatGen.1.0.5.tgz]] - Released 10/24/2012 |
| + | ** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.5]] |
| + | ** Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.5]] |
| + | ** Updates to: [[BamUtil: dedup|dedup]], [[BamUtil: polishBam|polishBam]], [[BamUtil: recab|recab]] |
| + | ** Update to add compile option to compile without C++0x/C++11 |
| + | ** See [[#Release of just BamUtil (does not include libStatGen)|below]] for additional details on updates |
| *BamUtilLibStatGen.1.0.4.tgz - Released skipped | | *BamUtilLibStatGen.1.0.4.tgz - Released skipped |
| *[[Media:BamUtilLibStatGen.1.0.3.tgz|BamUtilLibStatGen.1.0.3.tgz]] - Released 09/19/2012 | | *[[Media:BamUtilLibStatGen.1.0.3.tgz|BamUtilLibStatGen.1.0.3.tgz]] - Released 09/19/2012 |
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| To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. | | To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all. |
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− | [[Media:BamUtil.1.0.5.tgz|BamUtil.1.0.5.tgz]] - Released 10/24/2012 | + | [[Media:BamUtil.1.0.6.tgz|BamUtil.1.0.6.tgz]] - Released 11/14/2012 |
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− | '''BamUtil.1.0.5 Release Notes'''
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− | * Update to [[BamUtil: dedup|dedup]]
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− | ** Update logic for which pair to keep if they have the same quality
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− | * Update to [[BamUtil: polishBam|polishBam]]
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− | ** Update to print the number of successful header additions
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− | * Update to [[BamUtil: recab|recab]]
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− | ** Update to print the number of base skipped due to the base quality
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− | * General Updates
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− | ** Update to add compile option to compile without C++0x/C++11
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| + | '''BamUtil.1.0.6 Release Notes''' |
| + | * Update to [[BamUtil: trimBam|trimBam]] |
| + | ** Update to allow trimming a different number of bases from each end of the read |
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| '''Older Releases''' | | '''Older Releases''' |
| + | *[[Media:BamUtil.1.0.5.tgz|BamUtil.1.0.5.tgz]] - Released 10/24/2012 |
| + | ** Update to [[BamUtil: dedup|dedup]] |
| + | *** Update logic for which pair to keep if they have the same quality |
| + | ** Update to [[BamUtil: polishBam|polishBam]] |
| + | *** Update to print the number of successful header additions |
| + | ** Update to [[BamUtil: recab|recab]] |
| + | *** Update to print the number of base skipped due to the base quality |
| + | ** General Updates |
| + | *** Update to add compile option to compile without C++0x/C++11 |
| *BamUtil.1.0.4.tgz - Released skipped | | *BamUtil.1.0.4.tgz - Released skipped |
| *[[Media:BamUtil.1.0.3.tgz|BamUtil.1.0.3.tgz]] - Released 09/19/2012 | | *[[Media:BamUtil.1.0.3.tgz|BamUtil.1.0.3.tgz]] - Released 09/19/2012 |