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135 bytes added
, 17:44, 6 October 2011
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− | == Sequence Representation Parameters (<code>--seqOrig</code>, <code>--seqBases</code>, <code>--seqEquals</code>) == | + | == Recover a corrupted BAM file (<code>--recover</code>) == |
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| + | See [[#BAM File Recovery |BAM File Recovery]]. |
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| + | == Sequence Representation Parameters (<code>--seqOrig</code>, <code>--seqBases</code>, <code>--seqEquals</code>, <code>--refFile</code>) == |
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| The sequence parameters options specify how to represent the sequence if the reference is specified (refFile option). | | The sequence parameters options specify how to represent the sequence if the reference is specified (refFile option). |
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| Sequence with Bases: AATAACTAGATAGGG | | Sequence with Bases: AATAACTAGATAGGG |
| Sequence with Equals: AA======G===GGG | | Sequence with Equals: AA======G===GGG |
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| = BAM File Recovery = | | = BAM File Recovery = |