3,045
edits
Changes
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The diff'd record lines are tab separated, and are in the following order if --onlyDiffs is not specified:
The diff'd record lines are tab separated, and are in the following order if --onlyDiffs is not specified:
After April 16, 2012:
* '<' or '>'
* flag
* chrom:pos (chromosome name ':' 1 based position) - if --noPos is not specified
* cigar - if --noCigar is not specified
* mapping quality - if --mapq or --all is specified
* mate chrom:pos (chromosome name ':' 1 based position) - if --mate or --all is specified
* insert size - if --isize or --all is specified
* sequence - if --seq or --all is specified
* base quality - if --baseQual or --all is specified
* tag:type:value - for each tag:type specified in --tags or for every tag if --all or --everyTag specified
* ...
* tag:type:value
Prior to April 16, 2012:
* '<' or '>'
* '<' or '>'
* flag
* flag
