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=== Usage===
 
=== Usage===
 
<pre>
 
<pre>
  rgMergeBam [-v] [-l listFile] [-o outFile] [-L logFile] [inputBAMfile1] [inputBAMfile2] ...
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  rgMergeBam [-v]options) --list=<RGAListFile> --out=<outBamFile>
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rgMergeBam [-v] [-L logFile] [-l listFile] [-o outFile]
   −
Required arguments:
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Required parameters :
    -l listFile : File containing RG tags including [BAM] [ID] [SM] [LB]
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--out/-o : Output BAM file (sorted)
    -o outFile  : output BAM file name
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--list/-l : RGAList File. Tab-delimited list consisting of following columns (with headers):
Optional arguments:
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BAM* : Input BAM file name to be merged
    -L logFile  : log file name. default is listFile.log
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ID* : Unique read group identifier
    -v : turn on verbose mode
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SM* : Sample name
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LB : Library name
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DS : Description
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PU : Platform unit
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PI : Predicted median insert size
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CN : Name of sequencing center producing the read
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DT : Date the rn was produced
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PL : Platform/technology used to produce the read
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* (Required fields)
 +
Optional parameters :  
 +
--log/-L : Log file
 +
--verbose/-v : Turn on verbose mode
 
</pre>
 
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