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2 bytes removed
, 11:10, 9 July 2012
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| This value sets the maximum phred base quality assigned to a base after recalibrating. Any qualities above this value will be set to this value. It is defaulted to 50. | | This value sets the maximum phred base quality assigned to a base after recalibrating. Any qualities above this value will be set to this value. It is defaulted to 50. |
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− | == Logistic Regression (<code>--recabLogReg</code>) == | + | == Logistic Regression (<code>--useLogReg</code>) == |
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| Use the logistic regression empirical qualities for setting the new base qualities instead of the default formula: -10 * log10((#mismatches+1)/(#total+1)) | | Use the logistic regression empirical qualities for setting the new base qualities instead of the default formula: -10 * log10((#mismatches+1)/(#total+1)) |