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= Usage =
= Usage =
./bam trimBam [inFile] [outFile] [num-bases-to-trim-on-each-side]
./bam trimBam [inFile] [outFile] [num-bases-to-trim-on-each-side]
Version 1.0.6 and later:
Alternately, the number of bases from each side can be specified (either or both -L/-R (--left/--right) can be specified):
Alternately, the number of bases from each side can be specified (either or both -L/-R (--left/--right) can be specified):
./bam trimBam [inFile] [outFile] -L [num-bases-to-trim-from-left] -R [num-bases-to-trim-from-right]
./bam trimBam [inFile] [outFile] -L [num-bases-to-trim-from-left] -R [num-bases-to-trim-from-right]
trimBam will modify the sequences to 'N', and the quality string to '!'
trimBam will modify the sequences to 'N', and the quality string to '!'
= Parameters =
= Parameters =
